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Summary

Experienced bioinformatician with expertise in several domains of modern bioiformatics including computational genomics, metabolomics and basic proteomics. Special focus is given to modern genomics including the majority of Next Generation Sequencing applications (RNA-Seq, ChIP-Seq, DNA/Exome-Seq etc.) Familiarity with a variety of programming and scripting languages and the use of bioinformatics analysis tools and methodologies with focus on genome bioinformatics: biological sequence analysis, DNA motif analysis, NGS and microarray data analysis, familiarity with biological databases and Machine Learning/Data Mining techniques. Skills: Operation of engineering and statistical packages MatLab, R, Mathematica, Minitab, SPSS. Programming/scripting languages and frameworks: i) application development: Perl, Python, Java ii) web development: HTML, JavaScript, jQuery, PHP, MeteorJS, R shiny iii) Databases: MySQL, MongoDB.

Experiences

Current Experience

  • Co Founder
    Since April 2014
    High-throughput bioinformatics services, biostatistics and bioinformatics software development.

  • Bioinformatics post doctoral fellow
    Since June 2012
    Development of algorithms and software for several aspects of Next Generation Sequencing applications including ChIP-Seq, RNA-Seq etc. as well as data management. Statistical analysis and assessment of the results. Involvement in several state of the art molecular biology projects studying liver and colon biology.

Past Experience

  • Bioinformatics post doctoral fellow
    May 2011 --- July 2012
    Development of a pipeline for the analysis of CE/MS data with focus on the statistical identification of internal normalization standards and of a visualization interface for visualizing Semantic Web relationships stored in the Kidney and Urinary Pathway Knowledge Base (KUPKB)

  • Research in bioinformatics
    September 2006 --- April 2011
    Bioinformatics research assistant with focus on the analysis and meta-analysis of high throughput functional genomics data, standardization, normalization, statistical analysis and analysis workflow organization for data derived from DNA microarrays and Next Generation Sequencing data. Development of relative software and application to several state of the art biological problems.

  • Visiting bioinformatics researcher
    January 2008 --- January 2008
    Standardization, normalization, statistical analysis and analysis workflow organization for Next Generation Sequencing (ChIP-Seq) data

Personality

Self Assessment :
EfficiencySelf-disciplineSelf-confidenceCreative thinkingResult OrientedIndependenceCuriosityKindnessInnovative thinking

Knowledge

LinkedIn Assessment :
jQueryNumerical AnalysisQuestionnaire AnalysisMongoDBMeteorRStudioShinyBioinformaticsRMachine LearningPerlMatlabSequence AnalysisDNAJavaPythonSystems BiologyStatisticsMicroarray AnalysisData MiningSPSSDNA sequencingGenomicsSQLComputational BiologyHTMLPHPStatistical ModelingMinitabChIP-seqRNAseqMicroarrayFunctional GenomicsNGSJavaScript

Skills and Expertise

Self Assessment :
Analytical skills Analyze data Control data Guide students Technology researchBiomarker ResearchData miningDesign database Determine statistical analysis Develop software programsExecute scientific projectsInterpret scientific dataR&DSupervise PhD studentsSupervise techniciansWork cross-functionally

Education

  • PhD in Bioinformatics from National Technical University of Athens in 2010
  • MSc in Bioinformatics from in 2005
  • Bachelor in Applied Mathematics and Physics from National Technical University of Athens in 2004

Training and Certification

  • Post doctoral researcher Bioinformatics in Genomics in 2016 Training
  • Post doctoral researcher Bioinformatics - Chemoinformatics in 2012 Training
  • PhD Bioinformatics in 2011 Certification
  • MSc Bioinformatics in 2005 Certification
  • Diploma and MSc Applied Mathematics and Physics in 2004 Certification

Languages

BrightOwl Assessment:
Self Assessment:
English
Full Proficiency
French
Professional Proficiency
Greek
Native

Work Preferences

  • Positions I am interested in:
    Bioinformatician Senior Bioinformatician Senior Bioinformatics Scientist
  • Positions I am NOT interested in:
    Bioinformatics technician
  • Locations I am interested in:
    Austria Belgium Denmark France Germany Netherlands Norway Sweden United Kingdom United States
  • Work From Home:
    No
  • Work Regime:
    Permanent position :    100% FTE
  • International:
    Yes

Area / Region

Vrilissia, Vorios Tomeas Athinon, Greece

Others

Driving License
  • Yes