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Summary

Bioinformatician with over 5 years of experience in developing various Data Analysis pipeline and big-data Databases. proficient in Linux operating system, various programming environments and Statistical analysis. experienced in closely collaborating with a large team of international scientists, performing Data Analysis and creating user friendly automated Data Analysis pipelines for biologists and publishing results in international journals. educator with over 10 years of experience in Teaching high school and University students. worked as a Freelance private Tutor prior to Teaching at the University at bachelor's and master's level in Biomedical Sciences at my current job. additionally, served as an mentor for google summer of code projects. looking for opportunities in modelling disease pathways, drug designing, large scale Data Analysis, pattern recognition, and network science. my key skills are as follows. programming in Java, c++, Perl, Python, and shell scripting. Statistical analysis in r and MATLAB. Web Development in HTML, CSS, JavaScript, PHP. database development in MySQL. operating in Linux & Windows environments. communicating efficiently in English, bengali, hindi, and dutch. Teaching at University level; giving lectures, supervising practicals and internships. administrative; managing international Student exchanges, writing annual reports. management; Time Management, leading complex projects. Communication; collaborating actively with scientists from multiple domains, end users, speeches at international conferences.

Experiences

Current Experience

  • PhD researcher


    Since November 2011
    working on Software solutions for integrative visualization of modelled and measured genomic data. actively participating in the educational activities of the department. experienced in giving lectures, assisting in practicals and supervising Student internships. Working on software solutions for integrative visualization of modelled and measured genomic data. Actively participating in the educational activities of the department. Experienced in giving lectures, assisting in practicals and supervising student internships.

Past Experience

  • Google Summer of Code 2013 - Mentor

    May 2013 --- August 2013
    mentored the pathsbml plugin for pathvisio in gsoc 2013. the plugin allows import, Validation, automatic layouting and export of sbml moels in pathvisio.

  • Google Summer of Code 2012 - Student

    May 2012 --- August 2012
    participated in the google summer of code program in 2012 as a Student. working on pathvisiorpc- the xmlrpc interface for pathvisio.

  • Intern

    January 2011 --- June 2011
    gained experience working on multidisciplinary Research, collaborating with both biologists and computer scientists. my project was to extend a pre-existing Microarray Data Analysis pipeline adding Statistical analysis and Biological evaluation modules.the pipeline has been used in many courses and workshops since. the portal is also used in the Data Analysis course for bachelor and master students of molecular Life Sciences at maastricht University (www.arrrayanalysis.org).

  • Intern

    September 2010 --- December 2010
    analysed metabolomics data to ascertain an extraction procedure using esi qtof Mass Spectrometry, which allows extraction of maximum number of metabolites in both positive and negative ionization modes. seven extraction methods were compared and metabolites extracted using each were grouped, which also helped us to determine the best extraction procedure for a group of compounds. additionally, developed an in house metabolite database for use in the project as well as a second database for snake venom for an ongoing project in the Toxicology department of manipal Life Sciences centre.

  • Private Tutor

    April 2002 --- June 2009
    tutored secondary school students in Mathematics and science (Physics, Chemistry, Biology).

Personality

Self Assessment :
DiligenceIndividualityCoordinationIndependenceAnalytical thinkingCreative thinkingInnovative thinkingStrategic thinking

Knowledge

LinkedIn Assessment :
BioinformaticsRGenomicsStatisticsComputational BiologyJavaData Analysismolecular biologyPerlMicroarray AnalysisSystems BiologyLifesciencesC++MatlabHTML + CSSMySQLProgrammingMass SpectrometryMetabolomicsDatabasesLinuxBioconductorGeneticsBiochemistryDrug DesignTranscriptomicsProteomicsPythonCell biologyScientific WritingscienceChemistryProtein chemistryMicrobiologyMolecular geneticsBiostatisticsLaTeXLife SciencesPHPSequence AnalysisData MiningMicroarrayEclipseSQLUMLXMLSoftware EngineeringProject ManagementProduct developmentResearch

Skills and Expertise

Self Assessment :
Pathway AnalysisExpression data analysisMicroarray data analysisDatabase DevelopmentDevelop software programs

Education

  • MSc in Bioinformatics from Manipal University in 2011
  • BSc in Zoology, Chemistry, Botany from Calcutta University in 2009
  • Indian School Certificate in English, Physics, Chemistry, Biology, Biotechnology from G.D Birla Centre for Education in 2006
  • ICSE in English, Mathematics, Science, Computer Science, Social Science from G.D Birla Centre for Education in 2004

Languages

BrightOwl Assessment:
Self Assessment:
English
Native
Dutch
Elementary Proficiency
Hindi
Full Proficiency

Work Preferences

  • Notice Period:
    4 weeks
  • Locations I am interested in:
    Maastricht, Netherlands
  • Work From Home:
    Yes, 0 to 1 days per week
  • Work Regime:
    Permanent position :    100% FTE
  • International:
    Yes

Publications

    Expert has 4 publications (Will be avalible with full profile)

Area / Region

Maastricht, Netherlands

Others

Driving License
  • No

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