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Summary

i work on in Bioinformatics for next-generation Sequencing, mainly on illumina hiseq/miseq data, although previously used roche-454. i am interested in using Sequencing data to identify underlying genetic causes of chronic disease and for regenerative Medicine. i'm convinced that third generation Sequencing will make a big impact in Medicine as Sequencing costs reduce and accuracy and speed improve. i am also interested in database Software, especially for medical Applications. specialties: Computer programming, Medicine, next-generation Sequencing, Bioinformatics.

Experiences

Current Experience

  • Visiting Research Fellow


    Since January 2015
    completing Analysis and manuscripts. Completing analysis and manuscripts.

Past Experience

  • Software developer

    February 2016 --- May 2016
    developing a web-based database to share results from sirna and shrna experiments into genetic dependencies in Cancer.

  • Research fellow

    April 2014 --- December 2014
    analysing next-gen Sequencing data for possible associations with age-related macular degeneration.

  • Sequencing Bioinformatician

    April 2009 --- April 2014
    Bioinformatics for roche-454 and illumina miseq/miseq Sequencing. assembly and mapping of sequence data for identifying snps and transcript expression, and developing pipelines for automating demultiplexing and qc of Sequencing data.

  • SHO locum

    February 2009 --- April 2009
    sho General Medicine

  • Java programmer for eLearning

    October 2007 --- October 2008
    developing web-based resources for Teaching students in Life Sciences about magnetic resonance Mass Spectrometry.

  • SHO

    January 2003 --- January 2006
    senior house officer in General Medicine, Cardiology, Rheumatology, elderly care, and Neurology

  • JHO medicine and surgery

    January 2002 --- January 2003

  • Research Assistant

    January 1994 --- July 1997
    exploring Algorithms for detail suppression of finite-element models of Engineering components, using c++, fortran, acis, fem, pafec, and abaqus.

  • Quality Engineer

    October 1989 --- January 1994
    in quality services laboratories, especially dimentipnal calibration, quality specifications, and developing calibration database.

Knowledge

LinkedIn Assessment :
BioinformaticsProgrammingComputational BiologyRHigh Performance ComputingStructural BioinformaticsResearchGenomicsSequencingSequence AnalysisDNA sequencingGeneticsData AnalysisBiostatisticsMedicineC++PerlLifesciencesStem CellsMicroarray AnalysisCell biologyLife SciencesSystems BiologyDNA sequencingmolecular biologyscienceComparative GenomicsCell CultureProteomics

Education

  • MRes in Bioinformatics from University of Leeds in 2007
  • MB, BCh in Medicine from Queen's University Belfast in 2002

Languages

BrightOwl Assessment:
Self Assessment:
English
Native

Area / Region

Belfast, United Kingdom

Others

Driving License
  • Yes

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